rMATS-ISO

Xing Lab, University of Pennsylvania

Updates

1/2/2019

Release of rMATS 0.1.2

Beta Testing Version of rMATS-ISO. Update the main program to enable calling for each component. The user guide is also updated. The two basic components for splicing event detection and statistical test are available in the current version. The other components will be added in future versions.

12/14/2018
Release of rMATS 0.1.1
Beta Testing Version of rMATS-ISO. Fixed issues in EM.out.

Citation

The rMATS-ISO manuscript is in prepartion. Please cite the rMATS manuscript for now.

Shen S., Park JW., Lu ZX., Lin L., Henry MD., Wu YN., Zhou Q., Xing Y. rMATS: Robust and Flexible Detection of Differential Alternative Splicing from Replicate RNA-Seq Data. PNAS, 111(51):E5593-601. doi: 10.1073/pnas.1419161111

About rMATS-ISO

rMATS-Iso is a generalization of the rMATS statistical framework, to detect differential splicing modules with complex splicing patterns using replicate RNA-seq data.

Software Download

Release: rMATS 0.1.2 download (Linux)

Questions/Comments

Have comments or questions about rMATS-ISO? Please post them on the rMATS Users Google Group.